NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210092_1007157

Scaffold Ga0210092_1007157


Overview

Basic Information
Taxon OID3300025978 Open in IMG/M
Scaffold IDGa0210092_1007157 Open in IMG/M
Source Dataset NameWetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_TuleB_D2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1403
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location
Location NameUSA: San Francisco Bay, California
CoordinatesLat. (o)38.107521Long. (o)-121.649681Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029140Metagenome / Metatranscriptome189Y
F105449Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0210092_10071572F105449AGGAGGMTLKCAECGRIALKLNAEKKCEECAKKDESIKSYFTKLFFINEGCARLVPAT
Ga0210092_10071573F029140AGGAGGMKDASKEILRFWKTQWEAYMKSMTAMQEQGETMLEMIQKSGVLQEGSLNMVRDWAKKYKSIQKSYLDAVEEHFEKLDEIIGGTP

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