NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207658_10136068

Scaffold Ga0207658_10136068


Overview

Basic Information
Taxon OID3300025986 Open in IMG/M
Scaffold IDGa0207658_10136068 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1981
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034723Metagenome / Metatranscriptome174N
F070408Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0207658_101360681F034723AGGAGMVAMVLNLEVADYDEWKKLFDSDPGGRKGVATGHTISRNVENPNDVFIRTEYRSVEDAKKVRQQLLDSGALNRSTVKTPPTIIEVADQATY
Ga0207658_101360682F070408N/AMRRVLDVGLIVGFLAVDFLFFHDIFKTGEVTTLPQYLTGFLSILVFASCSQSLLTSRRH

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