NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207658_10454921

Scaffold Ga0207658_10454921


Overview

Basic Information
Taxon OID3300025986 Open in IMG/M
Scaffold IDGa0207658_10454921 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1134
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045974Metagenome / Metatranscriptome152N

Sequences

Protein IDFamilyRBSSequence
Ga0207658_104549211F045974AGGAMNQQLICELNLALIPETELASRHITFSRQMAGRYRSLIQLDGVTPKVAFTPHVTLYQVPVQAGDLPELHAALLNVAAKAPQLWLSATEYRSNQDEGSFEVRYAPATSLMELQADTIAMVNPLRKDLLLERDPAGRPLSERIDEPGLAGDNIRQTGFDAVGDPAKGGLFYPHVTLNWFELGTSVELNTTDWPSLTYFDGRCVALGLFLLGPYGTCAQRLAALPLAA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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