Basic Information | |
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Taxon OID | 3300026003 Open in IMG/M |
Scaffold ID | Ga0208284_1002792 Open in IMG/M |
Source Dataset Name | Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_201 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1351 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Twitchell Island, California | |||||||
Coordinates | Lat. (o) | 38.1087 | Long. (o) | -121.653 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006941 | Metagenome / Metatranscriptome | 361 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208284_10027921 | F006941 | AGG | MLHLIERISEQCARPATRLKHPAQELHQTLHKVMRGFGRQCRGQGKVLVTLVRQTEQHLLDLGSTITTWSQEAQALLHQDTHLREAQRQRLLRDLEAASDAHRQITKQSQRLTQGKKLGQCKIVNAYDPTIAPILKGKSNCPAQFGRKIGLLSEPASGFIFAHRVPKGNPSDPSYVLPMLDKVQQAIDLVTSPKRLQIHSLGGDLGVNDAELRHALHTRGILTVGIPTTV |
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