NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207677_10013689

Scaffold Ga0207677_10013689


Overview

Basic Information
Taxon OID3300026023 Open in IMG/M
Scaffold IDGa0207677_10013689 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4708
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064075Metagenome129N

Sequences

Protein IDFamilyRBSSequence
Ga0207677_100136891F064075GGAMRTHPLVPVLAFAVLSATTASAQASTQSGQSAAQSTPCHRCLNGFRFVPSSVVDEPFTNTSFENATGGGIALNLQVPVRNLAGDTISTLNGNIGFFLLDFEYQKSITKWLALRAGVTGIGRLGTSLEALVASGISAAMGGYIGATVPVWSKPNFLISAVADLKNNKQWDVDPYSFAKDVVDSGYNDTTKAVLLSSERVNRWSFGLRGAWAVKPWMGLTANIEPGGADGEVSGNKSLSTFGALAGFDLHKLWDVPISTTLAYRVRTGSGKSGNISGGYRSAQLGVYYNALREVLIGGDFFYSTIRVQGGSIPDLDAIQFRLVTHIDF
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