NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207639_10425813

Scaffold Ga0207639_10425813


Overview

Basic Information
Taxon OID3300026041 Open in IMG/M
Scaffold IDGa0207639_10425813 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1201
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049255Metagenome / Metatranscriptome147Y
F095859Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0207639_104258133F095859AGGGGGMRKSYFETAAEFFDRSSVPKEIADLWDEWRELDPDTARLVRAAVSSRSPRQLRVVWHLLAARAELARAAR
Ga0207639_104258134F049255AGGAGMVFRISRLRIVTAEDAGFSDLVLTLPDGAETCLYCGRGSRDSLAMVLAADESDDTPLPLYTVVCSMCSTVPPTDQLFADWDQRLAERRCPGDKVQWQDYVGVYLRDAADDQAEIEIAGRVYRVQRAELGPVGP
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