NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208654_1012686

Scaffold Ga0208654_1012686


Overview

Basic Information
Taxon OID3300026062 Open in IMG/M
Scaffold IDGa0208654_1012686 Open in IMG/M
Source Dataset NameNatural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailC_D1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1060
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location
Location NameUSA: Antioch, San Francisco Bay, California
CoordinatesLat. (o)38.052479Long. (o)-121.7687Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007702Metagenome / Metatranscriptome346Y

Sequences

Protein IDFamilyRBSSequence
Ga0208654_10126862F007702N/ASALEAIREHPGTYFRGVADTFWDFLMQAPLREDVAPREQTAPEEPAPTFEREGATLPNPQAHVLLEAVPYGFVWCASDYIDSCTLDDPALVWDDPATQERYREIVSRARAWDADLPAREGVSAVPELLNRVTPRYPRPPLWLAVGAIALVWRRPRGTRTILVLWTAAALVLLVHAVSQGVAPEFALPVYPMFVVTALGALAGERRSPAGVSASGMSAR
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