NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207678_10606952

Scaffold Ga0207678_10606952


Overview

Basic Information
Taxon OID3300026067 Open in IMG/M
Scaffold IDGa0207678_10606952 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)959
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009131Metagenome / Metatranscriptome322Y
F032187Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0207678_106069521F009131N/ASSKERCYEKSMKCVETIKTSFACVGAYSNEGNFVLGDPEGPIDWINGEAEAFEEILSGRGDICAFSGARGIAAILERGGCEHVKSLAQTEAALSIEDIKDPSAEASLVGGKFFTDIWENGGREMAQEIIRKSEKGIHDAREVAEATEKSADLERRIGID
Ga0207678_106069522F032187N/AMTSNLFTLCITAALSPPPEPVEPLADPKAKEDDEIIKMAEAIMDKVVDQLLNEAAEVVLKED
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