Scaffold Ga0207961_1022741

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207961_1022741

Scaffold Ga0207961_1022741

Overview

Basic Information
Taxon OID	3300026073 Open in IMG/M
Scaffold ID	Ga0207961_1022741 Open in IMG/M
Source Dataset Name	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_250_ad_252m_LV_B (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1445
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location Name	Atlantic Ocean
Coordinates	Lat. (^o)	-0.015038	Long. (^o)	-22.962334	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002715	Metagenome / Metatranscriptome	535	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207961_10227414	F002715	AGGA	MAEELQDVKLEVGLLKNEVEARGKQTEVLLSKLDLTTDKLQQLTVQIIKLNTRQEDHLKHDTTVRDELKILHTRIGDLHDKQLSAQKEIEHRLDRLDQYKSKLMGMIVVVGGALGVTVTLALHFL

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