Basic Information | |
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Taxon OID | 3300026077 Open in IMG/M |
Scaffold ID | Ga0208749_1000204 Open in IMG/M |
Source Dataset Name | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_DCM_ad_63m_LV_B (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 15009 |
Total Scaffold Genes | 42 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 26 (61.90%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Southern Atlantic ocean | |||||||
Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001026 | Metagenome / Metatranscriptome | 802 | Y |
F003869 | Metagenome / Metatranscriptome | 464 | Y |
F009691 | Metagenome / Metatranscriptome | 314 | Y |
F013094 | Metagenome / Metatranscriptome | 274 | Y |
F015105 | Metagenome / Metatranscriptome | 257 | Y |
F043983 | Metagenome / Metatranscriptome | 155 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208749_100020418 | F001026 | AGGAGG | MARHLLVLDDMELTALITHLEGQNEMMCESRLNCSNPSETPDREEVLLNLVYEKAFTMGWDKHINPKVDFDLIKNQDRIYKY |
Ga0208749_100020420 | F043983 | AGGAG | MPLTQDELQTVINLVDARLERQYNEEYQTILDKLTEYQWRSYDV |
Ga0208749_10002043 | F013094 | GGAGG | MISAFFTGVVVAIPTSILAMKLLNSSLFIDNQELRNINEKISIVIHQIDEYREERLAEKEEVN |
Ga0208749_10002044 | F009691 | GGAGG | MKSTLNSKDYVTFARRFVKETVATMDIEELRSLVTNQIHEEIQEGENTYGQSGAFDEMIAWNEDVFLEVAKDFNLELEGV |
Ga0208749_10002047 | F015105 | AGGAGG | MDLQSRKANMVYEIASLINDDPLSAPVLIEELVDIMFDEQIDHIEDVIVNHFGVEVYGEETVELLSQQ |
Ga0208749_10002049 | F003869 | GGAGG | MAKTQYKRCHFYSIGSMMTDEEVHQVWEIVGNALDRNGFTDADGELSIRVYDETLKKNVVNVIDKSLEVKG |
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