NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208749_1016361

Scaffold Ga0208749_1016361


Overview

Basic Information
Taxon OID3300026077 Open in IMG/M
Scaffold IDGa0208749_1016361 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_DCM_ad_63m_LV_B (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1557
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED156(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004144Metagenome / Metatranscriptome451Y
F007002Metagenome360N

Sequences

Protein IDFamilyRBSSequence
Ga0208749_10163612F007002N/AMKDTYLTILNSYGDIIELDYQFDVPSIIDELKSSDKWIEGPNNKKGLTLTGSIDDLELTKRNDNSINDNLKKCPSLINFFKLWNSLAKCHAVNMNSGSFFRLHRDAYKTTQQMRIFIPLNKTELHEFAFIYDKNIVELKAGKPYLLNTKKQHGSFAMVDDIYHILMGIYVNPHNFKVVTNLLPNCVDHS
Ga0208749_10163613F004144N/AMRNIIKESIYHLKVETGWSYQYHLWHSIKNSSILIKIAFKSIVHGLLPFIWKADAPKEVIRLYHTIMKIEHIRKMDKLKEIPKNERYISNDTE
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