Scaffold Ga0207963

Basic Information
Taxon OID	3300026080 Open in IMG/M
Scaffold ID	Ga0207963_1007666 Open in IMG/M
Source Dataset Name	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_NADW_ad_2500m_LV_A (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026080 Open in IMG/M

Scaffold ID

Ga0207963_1007666 Open in IMG/M

Source Dataset Name

Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_NADW_ad_2500m_LV_A (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4530
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (80.00%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

4530

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (80.00%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (77.78%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location Name	Southern Atlantic ocean
Coordinates	Lat. (^o)	Long. (^o)	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Southern Atlantic ocean

Coordinates

Lat. (^o)

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003091	Metagenome / Metatranscriptome	508	Y
F005749	Metagenome	391	Y
F012582	Metagenome / Metatranscriptome	279	Y
F013775	Metagenome	268	Y
F015023	Metagenome	258	Y
F037260	Metagenome	168	Y
F040145	Metagenome	162	Y
F041256	Metagenome / Metatranscriptome	160	Y
F081450	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207963_100766610	F005749	AGGAG	MKKKSWLLMMSFDEHDSSSNEIKTLYHGKTKRNMVKTMDLFQDMNEHLVLALVEVDKKSTYDKIVDKEDSEEMFFMDSKKNWNNGKTYEDLKEEALEEMLMGSLIKGDMGYA
Ga0207963_100766612	F013775	AGGA	MVEKRQYETIKEFAKDYRTEIIPMLKSKGFTLSINTSRGSYYHDGRMNFMIKKVPNNFYVWTNEYSRYNKTEKSQKLLNTIRDRVRNLIAVTTDGLDVDLNFDYHRNVRYKPVPEGWDDEQNS
Ga0207963_100766613	F041256	GAGG	MNLNDYLIENDRHIGDLVKLFSVGTVVDKVNGDTFPMLAGGAIGFDEPMNLMEMDISDDSWEWYNSLANSDREIVDEVMDELSYFEYVLGNK
Ga0207963_100766615	F015023	GAG	MNTTFKHIDLNDSVNDFMNHLNNNMNKPDGYSYDLNTRGSKYFKVEMLSHGSRSVYCFINKRNGEILKSAGWRAPAKGARGSVLVTESYANSDWSGGWLYKVFGNVYK
Ga0207963_10076664	F081450	N/A	MVVYMTQFEEKSCKVLGVIIFLLVVMTWLQISGCSCPVPPPPSDYIDEVDTSNFV
Ga0207963_10076665	F012582	AGGA	MTEFHKKLRHLSTTMLHWAEDNKIQRKVVEGIAGDYEIPQRNGIDWKFDFKFVTKLDRMLSDGLDDKLKKKEMEMCNQLYKYYGSVYDPV
Ga0207963_10076666	F003091	AGGAG	MTMLPQKPITKPGEGKQRQKYLSQERYLEERWEISLGLKGPKRLEGESHEDFQDRRRAENGLLKEYLRGVWVKKEE
Ga0207963_10076667	F037260	N/A	MAKKKKTIPFHIAHNYKQWTSDQGYTFWAKDEQDAKFYLDKTEGNLGSLKEIKE
Ga0207963_10076668	F040145	AGGA	MTKKEWLRERVFVDMYGRPYNLSDVPMTHMKRSEAFAKRKLSKKEISYLYRKNEKTIIIDGC

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207963_1007666

Overview

Ecosystem & Geography

Associated Families

Sequences