NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207963_1007699

Scaffold Ga0207963_1007699


Overview

Basic Information
Taxon OID3300026080 Open in IMG/M
Scaffold IDGa0207963_1007699 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_NADW_ad_2500m_LV_A (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4516
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005103Metagenome / Metatranscriptome412Y
F013469Metagenome271Y
F099863Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0207963_10076991F099863N/ASEEELKAVKKKERIFDFFWSLEEQQTILGLLKGRKMKKELKKHLKDKEVKNV
Ga0207963_10076993F005103GGAMEMKQEEDNKIQIFINKKEMLYSHQNMARVINSFLPYLTNDDLTELGQDILDLFNHREKKETESKLEVEKHSWPYPDTKKQI
Ga0207963_10076998F013469N/AMVHSNGKSNDRHFRSSTGMSFSELLHELKRLRVQMRYSREIQKESELLDAEYHQIVKMQKRGELTLFELPDAAENKEKT
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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