NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208390_1000830

Scaffold Ga0208390_1000830


Overview

Basic Information
Taxon OID3300026081 Open in IMG/M
Scaffold IDGa0208390_1000830 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_SurfaceA_ad_6m_LV_A (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11302
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (77.42%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002137Metagenome / Metatranscriptome590Y
F004869Metagenome / Metatranscriptome420Y
F007756Metagenome / Metatranscriptome345Y
F009691Metagenome / Metatranscriptome314Y
F061924Metagenome / Metatranscriptome131N

Sequences

Protein IDFamilyRBSSequence
Ga0208390_100083010F007756AGGAGGMQTLKRYYINVKFEKYGTYTFEARSKEHAIEMYNDGDYGWSDYSEDFGEFNEVIEDVEEEVFADTQLSLEGVLA
Ga0208390_100083014F061924GGAGMDIQHKVTLTDTEITSLVNFIEYWNDVQQADQDLLDNIAKKLDNTIIRHREKVIKAQSKRPKEEW
Ga0208390_100083020F009691AGGAGMKTELNSKEYVSFARRFVKETVATMDIDELRSIVTNHIHEEIQNGENDFGQEGAFEEMQAWDQDIFDNVAKDYDLTLEDEEEV
Ga0208390_10008306F002137AGGGGGMKVSEVIEALSYYDGNDDITFYFLKNDTLTNCQVEDISFYTDSMGVEFTIQDTSEIMEEV
Ga0208390_10008308F004869GGAGMSYDTEHYYAVQTFLEDDELIKIWNIIEIAMNREGYDVENAELSMRLYDSELEENIEHDMENLLGSLSEGKDVESMGVTDEKVSPTHRRKDLDLL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.