NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208750_1025484

Scaffold Ga0208750_1025484


Overview

Basic Information
Taxon OID3300026082 Open in IMG/M
Scaffold IDGa0208750_1025484 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_O2min_ad_340m_LV (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1374
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000245Metagenome / Metatranscriptome1468Y
F002715Metagenome / Metatranscriptome535Y

Sequences

Protein IDFamilyRBSSequence
Ga0208750_10254842F002715AGGMPEEELQSVKLEVGLLKNEVEVRGRQIETLLQKLDLTADKLQELTVQIIKLNTRQEDYLRHSSSMRDEFKILHTRIGDLHDKQLAANKEIEQRLDRLDQYKSKLMGMIVVVGGVVGTIVATAISIFLKD
Ga0208750_10254843F000245AGGAMKTFKQFDEGKLDDKMDKYVSDEIKKRKLAKFPVNATDDIKMRMKPNKPVFKFPSPTGEMMIHVWLRPMAKPASKDTKAFNYQLEDK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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