NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207648_10180781

Scaffold Ga0207648_10180781


Overview

Basic Information
Taxon OID3300026089 Open in IMG/M
Scaffold IDGa0207648_10180781 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1867
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080564Metagenome115Y
F089092Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0207648_101807811F080564GGAMRRLMKLLVPVAGTIVSVAVLAPPALANTQVKTVNHVNFTYVEKEVCPFHLSVHLEGSYKSVDYYDGSGFLYKEINTSGGGEPFSVTYTAHGTTLIQRNEAYSEMITFHRDGTWTYTRRGPVAKFTVPGGGIVLLDTGTATWS
Ga0207648_101807813F089092GGGGGVTIDERLRSGLGVRPELTDSEIEGKLAVTIQRGRRRRTVRRAGIAVIGGVIALVLLAALPKLLTASNRKEPVRPPSPSIGGHSPSPIVGTYTLVLGPSEPGARRLHAVGTWVLTFRKGGNVSLSRGDAVSTGDYRLVSPSILITGLFDACRGTGPGDYSWAISEGVLRFFTPSTDPCPLRRFLLLGPGHGHAWVVGPPT
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