Scaffold Ga0207676_10952975

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207676_10952975

Scaffold Ga0207676_10952975

Overview

Basic Information
Taxon OID	3300026095 Open in IMG/M
Scaffold ID	Ga0207676_10952975 Open in IMG/M
Source Dataset Name	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	844
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan, Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001584	Metagenome / Metatranscriptome	668	Y
F021639	Metagenome / Metatranscriptome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207676_109529751	F001584	N/A	SFTVSMRTADDKWKAMWSILSGRSLTQPIQYGVTPPGFTTMIQPQKLIAGRVYAGFATDGHGGSSGVTFGFDKSGRMTFPDSFDR
Ga0207676_109529752	F021639	AGG	MIKLLSAFFAFGAIMCAVTIALLLFPGTSLDSLWRFNPDAHAAFSSIGRAALLLMLVVGTGCGFAAVGLWRKSLWGIWVALTILSLNIVGDLFNAVVRHDYRSLIGLPIGGAMIVYLARYRKAHRASLR

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