NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207676_11151062

Scaffold Ga0207676_11151062


Overview

Basic Information
Taxon OID3300026095 Open in IMG/M
Scaffold IDGa0207676_11151062 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)768
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015607Metagenome / Metatranscriptome253Y
F087411Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0207676_111510621F087411N/ARTKTYLTQEATKLCAELFALSGGRHYKRDGRLARALAASFAGTALRPPLPLALDSLVQQFSSD
Ga0207676_111510622F015607N/AAWLPAGLPGRRCRSASRRSCLRSLTGPSHVTPQLAVSGPTTTISSSYGGAIPFLLDAVHIDALGLNTPYIARHGTFDPDGPQDSKTDMRWVIDQRPDIVEGYLSGLALRRGAGGDEVIGARRRKMILEMVSSPRFQREYVFVRNAPYDRLDRAVFMRRDFCETHPKRDTFDCVPVAETSLAAFAGR
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