NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209953_1000158

Scaffold Ga0209953_1000158


Overview

Basic Information
Taxon OID3300026097 Open in IMG/M
Scaffold IDGa0209953_1000158 Open in IMG/M
Source Dataset NameSalt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_H2O_MG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26080
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (87.10%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location
Location NameSouth San Francisco, USA
CoordinatesLat. (o)37.4958Long. (o)-122.1331Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048914Metagenome / Metatranscriptome147Y
F097116Metagenome / Metatranscriptome104N
F100939Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0209953_100015818F048914N/AMETYLGQAPNVYNPDLGEFVREDHMHLAQVLKDLKPTYNLVYVPVKDRTTPEEKQKPWAILDKPDNLPEYVVRYLSEEEMKQPHKVLAWLFDGDIVRHGADNILKRIEAEENAKKLLDFKRQEDDLEDRLDHIEFLASGGRNKLHTVTHNGKKFER
Ga0209953_100015819F097116AGAAGMTYSSPTKTVGDVQSQVKRVFGDESGVQLTNNDITRWINEAQVDIAKQNQILQTTATLPVTGGTATYSLTSITPRIDTLASLLLDGRRVGNIPISQAEESISLADPEGTETGAPQFWYAWGGDITFWPKPNKNYTMTIRYNAQPTAVSTTAADVLAVPDECFTDVCNYVLMRAYEMDENAEMMAVKQAEYSTSVAERGEQERLAATMTYETNITFELI
Ga0209953_100015823F100939AGGMYRDKSSMGNRLAPQKGKYEDEEMKKKARERAMMNRLSSMPGRASS
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Institute for Fundamental Biomedical Research
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