NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209953_1004469

Scaffold Ga0209953_1004469


Overview

Basic Information
Taxon OID3300026097 Open in IMG/M
Scaffold IDGa0209953_1004469 Open in IMG/M
Source Dataset NameSalt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_H2O_MG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3377
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location
Location NameSouth San Francisco, USA
CoordinatesLat. (o)37.4958Long. (o)-122.1331Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001222Metagenome / Metatranscriptome743Y
F003188Metagenome / Metatranscriptome502Y

Sequences

Protein IDFamilyRBSSequence
Ga0209953_10044694F001222N/AMNKLEKLVRQTLNEAAKINFAGHQFVLKVDTNEDPNKKGVKVQFIPTEFGKITPTEQNDIANELAERLNDGLAEYDLRVERDRELKDKTIVGFFIYADQFDKMIRKALVGRNPNDPVDEPNPEV
Ga0209953_10044695F003188N/AMIDPKKRIRQVLHSIHPLSYRIKVTEPPKEHMDKKLFIDVIEGLKKIEDRRDFMQDEIGMDMTMYEDQFFVVIENLLKLHFNKEQLAIIQLYLYQLVPDKDWDGTITITKDGKNEEVVQFREATDVWNVINQLQNG
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