NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208451_1001097

Scaffold Ga0208451_1001097


Overview

Basic Information
Taxon OID3300026103 Open in IMG/M
Scaffold IDGa0208451_1001097 Open in IMG/M
Source Dataset NameMarine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3321_4155 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2373
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)-24.9939Long. (o)-35.9974Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053550Metagenome / Metatranscriptome141Y
F070556Metagenome / Metatranscriptome123Y
F092748Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0208451_10010973F053550N/AMREEIIKSRLKKNVLGQYPNAFAMNTETGVIIISGDIYIADEFYLPATMDEDKAWEYAALACRTKQQFNRTHPMRMDLSDIESKLNRINKRRGPRRKINKKG
Ga0208451_10010975F092748N/AMNVTKTYSSLNQTASIDLKRVEHLGKNYASIDFELKEHVNPNDFKYAKMKPIIGTFVIGNKRVDVTFSELNHIMRTAGAAMEQCDLAYRIGKWGHAQSR
Ga0208451_10010976F070556AGTAGMGFHKRYIDDDQVIEIYREQGNSAVIDWFISADAVITSGDLSEHISDILDIGLLTENDKWNKISELISDASIKKGFE
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