NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208391_1096495

Scaffold Ga0208391_1096495


Overview

Basic Information
Taxon OID3300026108 Open in IMG/M
Scaffold IDGa0208391_1096495 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_Bottom_ad_3770_LV_A (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)604
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010879Metagenome / Metatranscriptome298Y
F016206Metagenome / Metatranscriptome249Y

Sequences

Protein IDFamilyRBSSequence
Ga0208391_10964951F010879AGGAGMAQKRKVLKEVLFDDVEEKIEYDFLTRDQFFQKVPETRPMSARGLEIWERYLQDPKGFKF
Ga0208391_10964952F016206AGGAMAQAKKSKKKISKAMGEILKAPKKVEKVVKAAVKHVNHTHWDTKDAFSAAIAASGVNPNAINVNAEWDLYQSDTEGYRNHLKLEK

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