NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207674_10008330

Scaffold Ga0207674_10008330


Overview

Basic Information
Taxon OID3300026116 Open in IMG/M
Scaffold IDGa0207674_10008330 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11994
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002324Metagenome571Y
F013826Metagenome / Metatranscriptome268Y

Sequences

Protein IDFamilyRBSSequence
Ga0207674_1000833011F013826N/AMAVCWRCPQCSEVSCEEDASATGHPVACDHCQRPFPPQETLCAVCDAPNPWSRRDTLHFLCRECGTSQTYFRGAPAIASP
Ga0207674_100083309F002324GGAGGMGEIKLFQICYEGELTAGVSHAMRRLGAEPNFDQSWFVWLSGERHAAPLVRWLRSQVDDDARLLVACTQFTIARDFLLIRHSLTPDADYSELHDAVQRLGVVVALPFESTFVIQSGDCTDVQTLGRALGELCPDDALMVTGISHDWAYSDAGVSQMCVAAAADALQFRAF
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