NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207966_1062599

Scaffold Ga0207966_1062599


Overview

Basic Information
Taxon OID3300026119 Open in IMG/M
Scaffold IDGa0207966_1062599 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_NADW_ad_2500m_LV_B (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)937
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006423Metagenome373Y
F010479Metagenome / Metatranscriptome303Y
F063067Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0207966_10625991F010479N/AMKTFKGYLTEFASYSTSELVFRNAGQGTGSSGLMIPISSPMFKRIWPDTIRATVFHTTDLGGLKKLKRLEGGKKTISAFFSMMSRYMETGVATGGGIVAEMEA
Ga0207966_10625992F006423AGGMKSFKQHIDEKIEFYLDKSQDNTEKYVAHDGDYWYTGKIGMKGGEMFLKFTAISGKNSYFEKAKLKKTSPKEIEKDVGITVDSKKFYKR
Ga0207966_10625993F063067N/AYELNKGWSYLGKSVGGKEKSIIIKDYIDGMEKIMKKHSKQLRSLFTDYVDNRELTPDPDSGEFELWDEIVVNNFKIKKIHIGPEFGPDFEDEDDIDGFPFELYQDVGDMADYVTRTSQKG
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