Scaffold Ga0209957_1013555

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209957_1013555

Scaffold Ga0209957_1013555

Overview

Basic Information
Taxon OID	3300026126 Open in IMG/M
Scaffold ID	Ga0209957_1013555 Open in IMG/M
Source Dataset Name	Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_D2_MG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1761
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location
Location Name	South San Francisco, USA
Coordinates	Lat. (^o)	37.4971	Long. (^o)	-122.129	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F042909	Metagenome	157	Y
F093888	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209957_10135551	F093888	N/A	MTFNLFKQLSNVTGLPPIISICALVIIFSLILFGILISIKIRNIKKALNKLNDRLDTISQRLGRQPGEFQNIQPHKYKLGSHINNEIATDGRTSLEGSNTANIAQKNGFEEHRINTEISTKIHELLKKSSKPTLYHDLAKQLSKDYPDYNYDFFLKEVEDLQKEGKVEVQLIAGKLNFQIKKT
Ga0209957_10135552	F042909	GGA	MIELLNFIGSLNLWTFIVIWTSTIFLVIFISLLLFCVSQMNKETIKISQKVKILIEGLSEKKINV

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