NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208275_1005903

Scaffold Ga0208275_1005903


Overview

Basic Information
Taxon OID3300026182 Open in IMG/M
Scaffold IDGa0208275_1005903 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF49B (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2772
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007891Metagenome / Metatranscriptome343Y
F032240Metagenome180N
F056051Metagenome138N

Sequences

Protein IDFamilyRBSSequence
Ga0208275_10059032F007891N/AMTLYSNFFSNAVESVETKDNQVLITYSSNINKEYAYNCEDVPEFTNNLCSVLISNELQQDGGSVGAFVSQSRKDNVLLEA
Ga0208275_10059035F056051GAGGMIFIRSEKTGSVYTLDPNTLTELYYTPMMNDGDFATCFNDNDWTAVDWMHVTFEEDWVQPYLKDIHNQLLEEVTH
Ga0208275_10059036F032240GAGGLRLHVRCQSAPWENTTIDKNEAEAIDFAYNLAEDYQCDVDLLYDTVMQSSGLTSRVVYTTVSPL
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