NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208128_1023261

Scaffold Ga0208128_1023261


Overview

Basic Information
Taxon OID3300026186 Open in IMG/M
Scaffold IDGa0208128_1023261 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF51B (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1586
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023448Metagenome / Metatranscriptome210Y
F023958Metagenome208Y
F069347Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0208128_10232611F023448N/AYSHDNVIDKLLKLNERIAVDVDDVDDEGREKDLIWCQRLITDVKDSGLVPSKEEFIMANLMWKKYGFLPTDRKSTEENMWKLVDSMLTQENPSKIGAIKMYRRFVNSTLKEAKEMVDAREIKIKRNW
Ga0208128_10232612F069347AGGAMRPTKVHKARKRDTRRTEWGDPILNKLMKLKYLINDAYNHRQENDGETKSDKDWVMEEITNLRQGGWLSATKMKVANEMWNKYDG
Ga0208128_10232614F023958AGGAGMLQLAQFSDIIKAYDMLATAKASGLDFWEGVMLALFILKDVAIVGGILGTFIWYVKGRDG
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