Scaffold Ga0209929_1002934

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209929_1002934

Scaffold Ga0209929_1002934

Overview

Basic Information
Taxon OID	3300026187 Open in IMG/M
Scaffold ID	Ga0209929_1002934 Open in IMG/M
Source Dataset Name	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6013
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (91.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Maricaulaceae → Maricaulis → unclassified Maricaulis → Maricaulis sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location
Location Name	South San Francisco, USA
Coordinates	Lat. (^o)	37.4973	Long. (^o)	-122.1295	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F021778	Metagenome / Metatranscriptome	217	N
F025038	Metagenome / Metatranscriptome	203	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209929_100293412	F025038	GGAG	MLNKNNRRLFVEDEYDLYDVKKARPFWHDVCEVNGWEIVKDEEDFKEDYVCKINNELYFMELQVVGYWHNFDLSKISNVRISASKVRLLREKENGGLIFLNCVPNRFFAINVNQVTPEMKKDSVREQFYEIPLRIINPREVNVLDTNYCDCLENH
Ga0209929_10029346	F021778	GGA	MTMPKFLEDYTTVGELISKMNKEYPNCRLVAEMVDNGDDWVIFKSSFYENKEDTEPKATGYARQTKADHNSWFEMASTKANGRCLRVVFSESDATAEEMIGIAPSKEAAPKKSIEQELEKADIDYVDVSTSQIHVINNVKSFAMDLASENKTNAANWYAQALGELGINDKQLDINNMQTVKNKIQDIATEIQVGGA

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