NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208129_1011650

Scaffold Ga0208129_1011650


Overview

Basic Information
Taxon OID3300026193 Open in IMG/M
Scaffold IDGa0208129_1011650 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF47B (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2393
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053541Metagenome141Y
F054341Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0208129_10116503F053541N/AMSNNKVQIFINKREMSYSRQNMIEAIYDFMPYLNIDDLTTLGNDINSKIEKIRQNEQKSIEECKNIPIQSNRHDTTA
Ga0208129_10116504F054341N/AMCHQKKNMNKFPKDHPYMIRLDEVLKQYFVCKVTDANGAEHGEEYEEMKEEILNALFVPPEEIRTNPDK

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