NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209509_1008205

Scaffold Ga0209509_1008205


Overview

Basic Information
Taxon OID3300026194 Open in IMG/M
Scaffold IDGa0209509_1008205 Open in IMG/M
Source Dataset NameAnaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1_A C13 SIP DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4566
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor → Anaerobic Biogas Reactor Microbial Communites From Washington, Usa

Source Dataset Sampling Location
Location NameWashington, USA
CoordinatesLat. (o)47.6525Long. (o)-122.3049Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005744Metagenome / Metatranscriptome391Y
F031138Metagenome / Metatranscriptome183Y

Sequences

Protein IDFamilyRBSSequence
Ga0209509_10082052F005744GAGGLCVGDNMDEMFEIIKAGAPYGPPEQALYRIQHTYSDGSGSRLNVDWTGLHRLHDLIHDRIALEGRVCETCGTKGCHRPATWEIECRGVGVSGRLIYSCDEHCPDPAILSPQDEIRRCA
Ga0209509_10082054F031138AGAAGGMTKRNNYVGPCATACKPGAGTDTQNGTFDRILVAATEHAAREVGLPGRADRMIACRSCGAPTASSDGICRDCADAMRAERSEVLSALCRIHRVRRVEDLPVSVLEEMQVEWGRC
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