NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209509_1012640

Scaffold Ga0209509_1012640


Overview

Basic Information
Taxon OID3300026194 Open in IMG/M
Scaffold IDGa0209509_1012640 Open in IMG/M
Source Dataset NameAnaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1_A C13 SIP DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3199
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor → Anaerobic Biogas Reactor Microbial Communites From Washington, Usa

Source Dataset Sampling Location
Location NameWashington, USA
CoordinatesLat. (o)47.6525Long. (o)-122.3049Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009968Metagenome / Metatranscriptome310Y
F011593Metagenome / Metatranscriptome289Y
F053364Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0209509_10126405F009968AGGVNTCLGCRSHYRERHWWIFEIDFCGLDGDVVGFECPIGCIDTEGCPAYERRPAWPEGAIA
Ga0209509_10126408F053364GGAGGMTDPLNDILVDCARMRGSYPLMHRTLNEFAWFCSCAIWGAGPFIDGEIATAEADGEEALAGVLKDRRNEENGIRDRFKDRYKYGADELIRFAEAFREWCREQYGDLEVPE
Ga0209509_10126409F011593GAGGMSGSLTPPSYCLGCRWPIYDGRRGEWDWYCRQHSPTGIRCNNVAVLRERCYRVRDYFARKGAST
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