NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209509_1052925

Scaffold Ga0209509_1052925


Overview

Basic Information
Taxon OID3300026194 Open in IMG/M
Scaffold IDGa0209509_1052925 Open in IMG/M
Source Dataset NameAnaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1_A C13 SIP DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1057
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor → Anaerobic Biogas Reactor Microbial Communites From Washington, Usa

Source Dataset Sampling Location
Location NameWashington, USA
CoordinatesLat. (o)47.6525Long. (o)-122.3049Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004383Metagenome / Metatranscriptome440Y
F075034Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0209509_10529251F075034N/ASDREHLPSEAGLPGRADRMIACRSCGAPTASSDEICRDCADAMREERAEALGERCRVHRVRYVEDLPASVLEEMQAEWGRC
Ga0209509_10529253F004383GGTGGMPADENLLERAFMARIRADEHREALAALQQEFDERPDVIDLKRRIERCEEERRQCIEQAKAAGITKQGSFRLKVRTRKTRTVIPERFFARFGAEAFVRCSTVAIGKAEALLGKGTFDDCCEVAVKDLGATVEYERPEAGE
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