NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208127_1001463

Scaffold Ga0208127_1001463


Overview

Basic Information
Taxon OID3300026201 Open in IMG/M
Scaffold IDGa0208127_1001463 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV45 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11699
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020254Metagenome / Metatranscriptome225Y
F021734Metagenome / Metatranscriptome217Y
F049421Metagenome / Metatranscriptome146Y
F070879Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0208127_10014631F049421AGGAMIEVIVAIIGLGVGDYADPLDLNLEDRDKKVLMQTSCEETTTQDAYGQISTMKTCRTMKTITTTEEQD
Ga0208127_100146312F021734GAGGMQVLAIIGLVVGVGYGMDNDWKVAKGYKSYKECRAENPKFHNTMTQWKYDPCNLGAYYIKNNT
Ga0208127_100146313F070879AGAAGGMLGFKTFSGSPIASTGSGAIVDQKADFYAEALLQANANADWNSNPNIIGEAMLNTDSTIAGSGWVRQNPSTPEWDMDKSQDWNQIK
Ga0208127_10014632F020254AGGAMEMLWTVSAPAWQWIVGVAVALYVWEEYLEHVWYKFKHWVTNHPHKK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.