NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208521_1014364

Scaffold Ga0208521_1014364


Overview

Basic Information
Taxon OID3300026204 Open in IMG/M
Scaffold IDGa0208521_1014364 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV47 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2647
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005749Metagenome391Y
F013775Metagenome268Y

Sequences

Protein IDFamilyRBSSequence
Ga0208521_10143642F005749AGGAGMKKSWLLIMSFDEHNGSTNEIKTLYHGKTKRSMVKHMDLFQDMNEHLVLALIEVDKESTYDKIIEIEDSKEMFFMDSKSNWNNGKTYEDLKEEVLEEMLMGSLINGDMGYA
Ga0208521_10143644F013775AGGAMVEKKQYETVKEFAKDYRSEIVPMLKSKGFTLRINTSKGSYYYDGRMNFVIKGVPSNFYVWTHEYNRYSKTEKSQKLLGVIRDRVNSILVESNLDVDMNFDYDRNVRYKPIPDGWDDDDRNY
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Institute for Fundamental Biomedical Research
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