NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208131_1009878

Scaffold Ga0208131_1009878


Overview

Basic Information
Taxon OID3300026213 Open in IMG/M
Scaffold IDGa0208131_1009878 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV73 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2324
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F090256Metagenome108N
F105348Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0208131_10098782F090256AGGAGGVQSNTSTETSTLKVGDIGEQLVAEHFKHAERTDDWFDSEKDGTLKDKTYEVKTFRLNNKDQGFWVESSQFHKLDNVDILYFVKIPESKEEGATIYECRNHTGKDAYEKFTLGQFKQMRCYFLDNCKYIANINDERTDTIYEHSISMSKWKRFN
Ga0208131_10098785F105348N/AMKIGVILGRGVEGVGVTKNVVEFQKLFPRVEIFATMDKLWPRRESMNFPVTYFRGADWDMVSKPTKKFPNLIACNDVVHRINQLDACIIWSIPSKSHSEECID
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Institute for Fundamental Biomedical Research
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