Scaffold Ga0209838_1001731

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209838_1001731

Scaffold Ga0209838_1001731

Overview

Basic Information
Taxon OID	3300026214 Open in IMG/M
Scaffold ID	Ga0209838_1001731 Open in IMG/M
Source Dataset Name	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-047 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3082
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil → Permafrost Soil Microbial Communities From The Arctic, To Analyse Light Accelerated Degradation Of Dissolved Organic Matter (Dom)

Source Dataset Sampling Location
Location Name	Alaska, USA
Coordinates	Lat. (^o)	68.6137	Long. (^o)	-149.3144	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006512	Metagenome / Metatranscriptome	371	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209838_10017314	F006512	AGGAGG	VRAISKSLLVALLIGSLLNLPTFAANEKPLGLVTQAQEAQIGTAMVAIGTTVYPGDTVATDTGGILRLKVGGSQVYLLASSAATLSQNAQMVHALVARGTVGFSSNGTDQVGLEIPEGIVSAANGQPAYGQVTLIGPREVVISAYRGTLVLDNDGEMHTITAGKSYRVTMDLESPETKPVVQEAAGVGGKNSDIVAPKHRHLAFDLIVLGAIGAVSAVVYYEVTQSPSKP

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