NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209750_1012054

Scaffold Ga0209750_1012054


Overview

Basic Information
Taxon OID3300026237 Open in IMG/M
Scaffold IDGa0209750_1012054 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant MS upper layer 2012 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2062
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.534Long. (o)-110.7978Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006252Metagenome / Metatranscriptome377Y
F060673Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0209750_10120541F060673N/AFARIGVGIEGKQQRTEGGRRVRVYRLVNVERARLRTTGIRKRHADRTAPVFEFLGTPVTTHHRNKRKSDVVTAATAVH
Ga0209750_10120542F006252AGGGGGVRSFDEQAAFGLPYERLIAQAAALLLYPHRLDLTLVRLDAYAPLDYLLLDGERPVAALEVKRRSIRSDTYRTTIIPQSVVDAAKRLTIPVYAAILFTDGLAVFDVLRTPSGVRWLRTRRGRLRKHREYDISERLVKVEEVHQLPRRGA
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