NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208879_1050156

Scaffold Ga0208879_1050156


Overview

Basic Information
Taxon OID3300026253 Open in IMG/M
Scaffold IDGa0208879_1050156 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_A (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2011
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008649Metagenome / Metatranscriptome330Y
F023448Metagenome / Metatranscriptome210Y
F069347Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0208879_10501562F069347AGGMRPTKRTKATKKERGTKGNPVLSKLLKLKYRINDTAKIENGFSKDMGSDKSWVIEEISNLRNDGWLTATKMKVANEMWSKYGG
Ga0208879_10501563F023448GGCGGMAYNHDNVIDKLLKLNERIAVDKVDEVQKKDLIWCQRLLTDVKESGLVPDKQEFIMANLMWKKYRNGVEPTNEDMWELIDEMLTQENPSKIGAIKTYRRFTNSNLRDAKEMVDARQIKIEKGW
Ga0208879_10501565F008649N/AMTKLETLMLDVTGTLNHNGFDKVKVVSNNTNFSLRAGYWDRISASLIETMEEYHNVRITETFWDDEDCGTLYRYLVEVMDTGYTLNELNELESNYTEEALYLESVGADDMWGNA
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