NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208879_1073471

Scaffold Ga0208879_1073471


Overview

Basic Information
Taxon OID3300026253 Open in IMG/M
Scaffold IDGa0208879_1073471 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_A (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1546
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005749Metagenome391Y
F013775Metagenome268Y

Sequences

Protein IDFamilyRBSSequence
Ga0208879_10734711F013775N/AIKEFAKDYRTEIIPMLKSKGFTLSINTSKGSYWTDGRMNFVIKKVPSNFYVWENEYNRYNKTEKSKKLLEVIRDRVRNLIESSDFDVDLAFDYGTNIRYKPIPEGWDDERNS
Ga0208879_10734714F005749AGGAGMKKKSWLLIMSFDEHDGSPNDIKTLYHGKTKRNIVKTMDLFQDMNEHLVLALVEIDKKSTYDKIVDKEDSEEMFFMDSKRNWNNGKTYEDLKEEVLEEMLMGSLITGEMGYA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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