NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208408_1118920

Scaffold Ga0208408_1118920


Overview

Basic Information
Taxon OID3300026260 Open in IMG/M
Scaffold IDGa0208408_1118920 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV67 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)765
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000615Metagenome / Metatranscriptome984Y
F023718Metagenome / Metatranscriptome209Y
F068113Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0208408_11189201F068113N/AMRNEIEKVLEAMREDYKRWSWWSSSYKPNPHSDKTIMNEMIEDYCNGLEVTEGSRYWKITSNDRGGGRSVKGFIA
Ga0208408_11189202F023718GAGMKEKIDLSLNRSLEELIASYWEAVNGEIDNTQWGSFYALENYLSDYGAI
Ga0208408_11189203F000615N/AVSGLERPENIMCRIRLFYECSDGSMGFAEHVMRYEDDIVGFIKHWKTGGRMVITEHIDLV
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