NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207993_1001503

Scaffold Ga0207993_1001503


Overview

Basic Information
Taxon OID3300026270 Open in IMG/M
Scaffold IDGa0207993_1001503 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV265 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9052
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001479Metagenome / Metatranscriptome687Y
F004869Metagenome / Metatranscriptome420Y
F040144Metagenome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0207993_100150310F004869AGCAGGMTYDTEHYYAVQSFLEDDELYKIWNIIEIAMNREGYDVSNAELSMRLYDSELEENIEHDMENLLSSQSEGKDYGSKVDALVDSMGVTDQEVSTTHRRRDLDTL
Ga0207993_100150311F001479AGGAGMSKEMLFLCDVYDDWLDKNNLPHRSACDILYGQNACKLTPRQSYWLESFIATWDIISQNT
Ga0207993_10015039F040144GGAGGMTTQLHEFYVTRKCTKMEYFTVKAESLDEAKYEAEHGFDYYDFDWEEFDYETVEIKEQEIPEQQLTLAGVF
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