NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207993_1035896

Scaffold Ga0207993_1035896


Overview

Basic Information
Taxon OID3300026270 Open in IMG/M
Scaffold IDGa0207993_1035896 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV265 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1466
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED221(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F077259Metagenome / Metatranscriptome117N
F089769Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0207993_10358961F077259GAGMRSVNYQYIQQAYGILKTNLIPLSNRRLRRLAYFDVYFQNYTQLDLYNRYKKIVNSDASHNQMITLAVVLIIFSALIIILTKLYS
Ga0207993_10358962F089769N/AMTEDKDVWMKYETRIDELINNNKISLDDVAELFDIGHAYNIERKLIPERLSDWMKNQSDKFRSKSTSLYKTLGIDKPTSRPTDGYTMAMVVSDVWGEIFMERPVGEVFVNIGKKYDVDKSVIMQNFMKHWSAGLDYHLVLRMKELSPFEMGLVATLVSPIIEKNKSVSNKLN

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