Scaffold Ga0207993_1035896

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207993_1035896

Scaffold Ga0207993_1035896

Overview

Basic Information
Taxon OID	3300026270 Open in IMG/M
Scaffold ID	Ga0207993_1035896 Open in IMG/M
Source Dataset Name	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV265 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1466
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED221	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location Name	Pacific Ocean: Eastern Tropical North Pacific
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F077259	Metagenome / Metatranscriptome	117	N
F089769	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207993_10358961	F077259	GAG	MRSVNYQYIQQAYGILKTNLIPLSNRRLRRLAYFDVYFQNYTQLDLYNRYKKIVNSDASHNQMITLAVVLIIFSALIIILTKLYS
Ga0207993_10358962	F089769	N/A	MTEDKDVWMKYETRIDELINNNKISLDDVAELFDIGHAYNIERKLIPERLSDWMKNQSDKFRSKSTSLYKTLGIDKPTSRPTDGYTMAMVVSDVWGEIFMERPVGEVFVNIGKKYDVDKSVIMQNFMKHWSAGLDYHLVLRMKELSPFEMGLVATLVSPIIEKNKSVSNKLN

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