Scaffold Ga0209881_1000038

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209881_1000038

Scaffold Ga0209881_1000038

Overview

Basic Information
Taxon OID	3300026273 Open in IMG/M
Scaffold ID	Ga0209881_1000038 Open in IMG/M
Source Dataset Name	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 3 DNA2013-193 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	37223
Total Scaffold Genes	45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	35 (77.78%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil → Permafrost Soil Microbial Communities From The Arctic, To Analyse Light Accelerated Degradation Of Dissolved Organic Matter (Dom)

Source Dataset Sampling Location
Location Name	Alaska, USA
Coordinates	Lat. (^o)	68.6135	Long. (^o)	-149.3144	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007868	Metagenome / Metatranscriptome	343	Y
F099652	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209881_100003812	F007868	GGAG	MAQKITFYAIIDEFSSRDRPGGVLRRVVDGDGRVDEAFSPDLTWEFSPLLYAAERGDTMFEFVPIDEDEADRIVARIREAAGPAESPPSRP
Ga0209881_100003828	F099652	GGAGG	MNTIIAQPGRNAHPDPDAAARQRADRLARVTADQMESALAYLSMIDPEAFEIALTAVTATADEIHEDEDAIPLCRRCGSLVGIFLSRGLQWQHFRGDGVTSGAQEIYDPGHAAAVAWISPDEDPDEL
Ga0209881_100003839	F099652	GGAGG	MHTIIAQPGRNAHPDPDSAARHRADQLARATADQMEAALAYLSMIDPEAFEIAFTAATPDADQIHEDDEAIPLCRRCGSPVGIFLNRGLHWQHFRGDGVTSGAQEIYDPGHAAEVAWILPDEDPEDL

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