Basic Information | |
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Taxon OID | 3300026277 Open in IMG/M |
Scaffold ID | Ga0209350_1000316 Open in IMG/M |
Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 29835 |
Total Scaffold Genes | 27 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (85.19%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Angelo Coastal Reserve, California, USA | |||||||
Coordinates | Lat. (o) | 39.73825 | Long. (o) | -123.6301 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000043 | Metagenome / Metatranscriptome | 3655 | Y |
F003831 | Metagenome / Metatranscriptome | 466 | Y |
F011404 | Metagenome / Metatranscriptome | 291 | Y |
F058223 | Metagenome | 135 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209350_100031614 | F011404 | AGGAG | MQVIGRKAWLILLFAAIFQASQFHYCCDLTATPSASHICPVCSTAASVVATQSPVIAVVPVINRLEFTPLIISVSSAVERATSPRAPPSL |
Ga0209350_100031623 | F003831 | GGA | VAGESKADGGSIRSAIRWGLVLAAVATFGFRLPRLVHEMRAWRGAVQLGDTSGAEGLRTFVVADSIGLLVVLAFGVVIYFVLRPRSTSQP |
Ga0209350_100031624 | F000043 | GAG | MMHQLGWATLPGLRGLSVSEFRATPTNTPDNDRGVAIEFASEAEREAFLREIEAAFAARRFTNSADAFDTVKAWAQERVVKDRGGRVL |
Ga0209350_100031625 | F058223 | GGAGG | MKNAIETTVRILKRNPGTLLQSKDEEYAYWQSRPPIERLAATQELSFAFFEERGNEAEIRRQFLRSPVCLPRLSC |
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