Scaffold Ga0209863_10000574

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209863_10000574

Scaffold Ga0209863_10000574

Overview

Basic Information
Taxon OID	3300026281 Open in IMG/M
Scaffold ID	Ga0209863_10000574 Open in IMG/M
Source Dataset Name	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	17314
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil → Permafrost Soil Microbial Communities From The Arctic, To Analyse Light Accelerated Degradation Of Dissolved Organic Matter (Dom)

Source Dataset Sampling Location
Location Name	Alaska, USA
Coordinates	Lat. (^o)	68.6139	Long. (^o)	-149.3145	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000912	Metagenome / Metatranscriptome	839	Y
F016032	Metagenome / Metatranscriptome	250	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209863_100005742	F000912	AGCAG	MSLDAYVRCTCIRDGKAKPHPYPNRFTWDEAGAPSLTGDPTEEEWEAHDQWVQQSCGHEGYLISEPLGNITRVQHVREFLRDLQGNPGPKFPLLLKKVVYDGTHTGDFLPVKDSPALLREVDLVLGSSDILTDGEKEFFNGMKRLCEASIATGNVIMF
Ga0209863_1000057420	F016032	GAG	MLQRPHSSALLVIALLSCAACNKEAPPQPAAVAPSDRVAPSPVGTSQTILEKTFSLKASATFPFEIPAHAVQPHLHGIFESFAGQLHGASDDSANVDFLIMNEEQQAAFASDHPSEALFDVEASHNQAINFDLPASMSRPVKYYLLFRNSSGKGSKVVEANFRVDF

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