NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209438_1017462

Scaffold Ga0209438_1017462


Overview

Basic Information
Taxon OID3300026285 Open in IMG/M
Scaffold IDGa0209438_1017462 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2400
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048453Metagenome / Metatranscriptome148Y
F096773Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0209438_10174622F096773AGGAGMKGSGILVDAMGMARRGLGVIIVVTTIAGGPGSDALAQAGGAGVPGGRLPDAIDRATGLAEQPFNTLPMPAQPAEQYIPDRRVFVPQVGQQVDVPGHFAQRTPDGHVVEPPMTIPTPNGGPPIFLPGSAGVPPTP
Ga0209438_10174625F048453AGGAGGMGAHLFTKRLATGLVLALSSVFAAQTVSAVSEGSLRPSWSDSAMAEGWRAVCGDVRNVRDVPARSVAIRVQGLGSTGQVVSTRDHYVLADVPAGSRAVFCVPMPAGATSYNVTVLRADWGFVEAP
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