Scaffold Ga0209438_1040120

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209438_1040120

Scaffold Ga0209438_1040120

Overview

Basic Information
Taxon OID	3300026285 Open in IMG/M
Scaffold ID	Ga0209438_1040120 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1549
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Laytonville, California, USA
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022219	Metagenome / Metatranscriptome	215	Y
F066680	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209438_10401202	F022219	AGGAGG	MTEYKNWKILQIIPAQGGWKAVHCEGSANAELKISNRAIVCWALVEPAGGSAVGQREVRGIEQNSNDLTVVDDVIDMDEVGDDTDRNQYFLGYNDPEAHKESDYWIKQGNDRFRTEKEKRLAKQRGQAALRVASQEEDRSAHR
Ga0209438_10401203	F066680	AGG	MGTLPNKREVLQSILDQQDDLWIIMKPSRNDPIDPEDLCIFQNPGRWKEARVEIPMSWFLNQDLEKIETAVLDAIERAESGYKYT

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