NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209510_1021439

Scaffold Ga0209510_1021439


Overview

Basic Information
Taxon OID3300026290 Open in IMG/M
Scaffold IDGa0209510_1021439 Open in IMG/M
Source Dataset NameAnaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1 time_0 SIP DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3557
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (92.31%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA166(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor → Anaerobic Biogas Reactor Microbial Communites From Washington, Usa

Source Dataset Sampling Location
Location NameWashington, USA
CoordinatesLat. (o)47.6525Long. (o)-122.3049Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003987Metagenome / Metatranscriptome458Y
F004383Metagenome / Metatranscriptome440Y
F005744Metagenome / Metatranscriptome391Y

Sequences

Protein IDFamilyRBSSequence
Ga0209510_10214391F003987GGAGGMIPALPCGTFSDSDTPAGAFYVAAFEEGDTPHHVGEYRIETVIRALEALQACGYDDVEIGSIFAPDPEHVHLLLIGLDGEARFG
Ga0209510_102143913F005744N/AKAGAPDAPPEQALYRIQQTYPDGSGGRLNIDWEGLLRLHELIHDRIALEGYVCETCDTKGCYRPATWEIECRGAGVASCLIYSCDDHRPDPAILSPQDEIRRLAENRKVD
Ga0209510_10214393F004383GGAGMARIRADEHREALAALQQEFDERPDVIDLKRRIERCEEERRQCIEQAKAAGITKQGSFRLKVRTRKTRTVIPERFFARFGAEAFVRCSTVAIGKAEALLGKGTFDDCCEVAVKDLGATVEYERPEAGE
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