NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209890_10007761

Scaffold Ga0209890_10007761


Overview

Basic Information
Taxon OID3300026291 Open in IMG/M
Scaffold IDGa0209890_10007761 Open in IMG/M
Source Dataset NamePermafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4466
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil → Permafrost Soil Microbial Communities From The Arctic, To Analyse Light Accelerated Degradation Of Dissolved Organic Matter (Dom)

Source Dataset Sampling Location
Location NameAlaska, USA
CoordinatesLat. (o)68.6135Long. (o)-149.3144Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001432Metagenome / Metatranscriptome696Y
F087856Metagenome110Y
F089290Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0209890_100077612F087856GGCGGMSKLRRADYSENLAGKTIKRVHWCNHEQRKCLTLEFTDQTLCSFKFEVAVDEEAELSDFGSGSPSERRKLIPLPLVRLPVKPLL
Ga0209890_100077614F001432AGGAGGMSLKKEYVRDGKRQIIGSITSGFSDESAIVRDGDNKLSGRTSERYDTTRDDHGNLVSIDHADAGLLLGK
Ga0209890_100077615F089290GGAVHAHYSGDEKISVEGLIEEQRRLARSKTFFEKVVGTLCVAALLKEKLAALTDAAVGQLMIDHVWSELNLLGPESVIVEVASERLFHPSPVLVKSVKENINR
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