Scaffold Ga0209839_10054712

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209839_10054712

Scaffold Ga0209839_10054712

Overview

Basic Information
Taxon OID	3300026294 Open in IMG/M
Scaffold ID	Ga0209839_10054712 Open in IMG/M
Source Dataset Name	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1436
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil → Permafrost Soil Microbial Communities From The Arctic, To Analyse Light Accelerated Degradation Of Dissolved Organic Matter (Dom)

Source Dataset Sampling Location
Location Name	Alaska, USA
Coordinates	Lat. (^o)	68.6135	Long. (^o)	-149.3144	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002674	Metagenome / Metatranscriptome	538	Y
F069102	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209839_100547122	F002674	AGG	MRLESIALLATLASTIGVCGAAMAADEPSEAQMKEAALYAINHPPGIVNSEPITIKFFKKEACDAPTPRGYNCGFDWQVASSNIGASMYNNISNAFFYFDKDAGKWAMRPPF
Ga0209839_100547123	F069102	N/A	LAGIIAAGFIYGAMYLLMHSKQATLYRTPAKFRVSTTGIEVGGATIAKDAIHRILVRNHVLKSAEGIIVVASPLQNSGQQNVVAGMNWAISKLGPISYRVDVEARGVPTTLAGGLTEPTASAIMMDVSKILGLS

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